MIC-MAC 2.0
-Matlab
-segmentImage.m
- define fold_name


Process sample CTL488 CA1:
- condition = CTL CA1
- id = 488
- format = .tif
- channel_iba1 = 1
- begin_z = 1
- end_z = 33
- blurness = 25
- threshold = 0.2
- > run
- load: CTL488_CA1_stitched.tif


Process sample AD1669 CA3:
- condition = AD CA3
- id = 1669
- format = .czi
- channel_iba1 = 1
- begin_z = 5
- end_z = 27
- blurness = 25
- threshold = 0.1
- > run
- load: AD1669_hip_140119_Iba1555_mosaic3x3_20x_CA3.czi


Process sample DLB1158 DG:
- condition = DLB DG
- id = 1158
- format = .czi
- channel_iba1 = 1
- begin_z = 4
- end_z = 40
- blurness = 25
- threshold = 0.15
- > run
- load: DLB1158_203004_DG_iba1rb555_20x_mosaic3x3.czi