Raw data QC

Preprocessed data QC

Assembly visualization, QC and taxonomic annotation

In order to perform a human augmented binning of the contigs, please import the following fasta file to

Read mapping visualizations

In order to perform a human augmented binning of the contigs, please import the following fasta file to

KEGG Ontology based Functional Krona Chart

Visualizations of metatranscriptomic to metagenomic ratio

In order to perform a human augmented binning of the contigs, please import the following fasta file to

Variants

Statistics

Workflow diagram

The workflow is also available in PDF.

Configuration

IMP has run with the configuration file saved at: config.json.

Log

The log files register all commands that have been run by IMP.

The log are accessible in here IMP steps:

Result files

All results files can be found in the root directory of this report.



Please cite the pre-print article on http://biorxiv.org.

IMP: a pipeline for reproducible integrated metagenomic and metatranscriptomic analyses
Shaman Narayanasamy†, Yohan Jarosz†, Emilie E.L. Muller, Cédric C. Laczny, Malte Herold1, Anne Kaysen, Anna Heintz-Buschart, Nicolás Pinel, Patrick May, and Paul Wilmes*