[bwa_index] Pack FASTA... 1.24 sec
[bwa_index] Construct BWT for the packed sequence...
[BWTIncCreate] textLength=244977728, availableWord=29237300
[BWTIncConstructFromPacked] 10 iterations done. 48228240 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 89097632 characters processed.
[BWTIncConstructFromPacked] 30 iterations done. 125418432 characters processed.
[BWTIncConstructFromPacked] 40 iterations done. 157696416 characters processed.
[BWTIncConstructFromPacked] 50 iterations done. 186381104 characters processed.
[BWTIncConstructFromPacked] 60 iterations done. 211872128 characters processed.
[BWTIncConstructFromPacked] 70 iterations done. 234524576 characters processed.
[bwa_index] 88.14 seconds elapse.
[bwa_index] Update BWT... 0.86 sec
[bwa_index] Pack forward-only FASTA... 0.81 sec
[bwa_index] Construct SA from BWT and Occ... 37.88 sec
[bwt_gen] Finished constructing BWT in 76 iterations.
[main] Version: 0.7.9a-r786
[main] CMD: bwa index /output/Assembly/MGMT.assembly_1.fa
[main] Real time: 128.940 sec; CPU: 128.932 sec